STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEK14334.1Peptidase, M23 family; Identified by match to protein family HMM PF01551. (324 aa)    
Predicted Functional Partners:
EEK14429.1
Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376.
       0.783
EEK14586.1
Identified by match to protein family HMM PF04519.
 
   
 0.597
EEK15296.1
Hypothetical protein.
  
     0.539
ponA
Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.
  
   
 0.534
EEK14247.1
Hypothetical protein; Identified by glimmer; putative.
       0.497
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.