STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEK13362.1Heavy metal-associated domain protein; Identified by match to protein family HMM PF00403. (122 aa)    
Predicted Functional Partners:
EEK13475.1
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
 
     0.929
EEK15034.1
Heavy metal-associated domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00403.
  
 
 0.567
EEK15170.1
Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
 
 0.567
EEK15411.1
E1-E2 ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702.
  
 
 0.567
EEK14979.1
Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family.
  
     0.487
EEK13347.1
Hypothetical protein; Identified by glimmer; putative.
       0.434
gldH
Gliding motility lipoprotein GldH; Identified by match to protein family HMM TIGR03511.
  
     0.405
Your Current Organism:
Capnocytophaga gingivalis
NCBI taxonomy Id: 553178
Other names: C. gingivalis ATCC 33624, Capnocytophaga gingivalis ATCC 33624, Capnocytophaga gingivalis JCVIHMP016, Capnocytophaga gingivalis str. ATCC 33624, Capnocytophaga gingivalis strain ATCC 33624
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.