STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFM49226.1Hypothetical protein. (587 aa)    
Predicted Functional Partners:
EFM48476.1
ATPase, AAA family; Identified by match to protein family HMM PF00004.
 
     0.953
EFM48854.1
Hypothetical protein.
       0.807
EFM48657.1
Hypothetical protein.
       0.777
EFM47799.1
Hypothetical protein.
  
     0.626
EFM48188.1
Hypothetical protein.
  
     0.534
EFM47764.1
Hypothetical protein.
  
     0.526
EFM49331.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts.
  
     0.462
EFM49913.1
Transposase, IS4 family; Identified by match to protein family HMM PF01609.
  
     0.402
Your Current Organism:
Corynebacterium matruchotii
NCBI taxonomy Id: 553207
Other names: C. matruchotii ATCC 14266, Corynebacterium matruchotii ATCC 14266, Corynebacterium matruchotii str. ATCC 14266, Corynebacterium matruchotii strain ATCC 14266
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.