Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFM49289.1Hypothetical protein. (101 aa)    
Predicted Functional Partners:
EFM49453.1
Hypothetical protein.
       0.820
EFM49539.1
Identified by match to protein family HMM TIGR03816.
       0.808
EFM49341.1
Bacterial type II secretion system domain protein F; Identified by match to protein family HMM PF00482.
       0.775
EFM49515.1
Identified by match to protein family HMM TIGR03815.
       0.716
EFM49458.1
Helicase/secretion neighborhood ATPase; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR03819.
       0.716
EFM49265.1
Bacterial type II secretion system domain protein F; Identified by match to protein family HMM PF00482.
       0.716
EFM49681.1
Hypothetical protein.
       0.617
EFM49614.1
HAD hydrolase, family IB; Identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490.
       0.553
Your Current Organism:
Corynebacterium matruchotii
NCBI taxonomy Id: 553207
Other names: C. matruchotii ATCC 14266, Corynebacterium matruchotii ATCC 14266, Corynebacterium matruchotii str. ATCC 14266, Corynebacterium matruchotii strain ATCC 14266
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