Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEF14722.1 | EEF14828.1 | CAMRE0001_0798 | CAMRE0001_0799 | Phenylalanine and histidine ammonia-lyase; Identified by match to protein family HMM PF00221. | Putative possible cysteine--tRNA ligase; Identified by glimmer; putative. | 0.416 |
EEF14828.1 | EEF14722.1 | CAMRE0001_0799 | CAMRE0001_0798 | Putative possible cysteine--tRNA ligase; Identified by glimmer; putative. | Phenylalanine and histidine ammonia-lyase; Identified by match to protein family HMM PF00221. | 0.416 |
EEF14828.1 | cysS | CAMRE0001_0799 | CAMRE0001_0513 | Putative possible cysteine--tRNA ligase; Identified by glimmer; putative. | cysteine--tRNA ligase; Identified by match to protein family HMM PF01406; match to protein family HMM PF09190; match to protein family HMM PF09334; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.507 |
EEF14828.1 | nifJ | CAMRE0001_0799 | CAMRE0001_0800 | Putative possible cysteine--tRNA ligase; Identified by glimmer; putative. | Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | 0.483 |
cysS | EEF14828.1 | CAMRE0001_0513 | CAMRE0001_0799 | cysteine--tRNA ligase; Identified by match to protein family HMM PF01406; match to protein family HMM PF09190; match to protein family HMM PF09334; match to protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family. | Putative possible cysteine--tRNA ligase; Identified by glimmer; putative. | 0.507 |
nifJ | EEF14828.1 | CAMRE0001_0800 | CAMRE0001_0799 | Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176. | Putative possible cysteine--tRNA ligase; Identified by glimmer; putative. | 0.483 |