EEF15152.1 protein (Campylobacter rectus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EEF15152.1

Hypothetical protein. (314 aa)

Predicted Functional Partners:

fliN

0.974

flgE

0.950

fliN-2

0.943

fliM

0.923

fliL

0.922

fliQ

0.904

fliP

0.904

fliG

0.904

flhB

0.902

fliR

0.900

Your Current Organism:

Campylobacter rectus

NCBI taxonomy Id: 553218
Other names: C. rectus RM3267, Campylobacter rectus RM3267, Campylobacter rectus str. RM3267, Campylobacter rectus strain RM3267

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEF15152.1	flgE	CAMRE0001_1851	CAMRE0001_0303	Hypothetical protein.	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM PF07559; match to protein family HMM TIGR02489; match to protein family HMM TIGR03506.	0.950
EEF15152.1	flhB	CAMRE0001_1851	CAMRE0001_1791	Hypothetical protein.	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	0.902
EEF15152.1	fliG	CAMRE0001_1851	CAMRE0001_1897	Hypothetical protein.	Flagellar motor switch protein FliG; Identified by match to protein family HMM PF01706; match to protein family HMM TIGR00207.	0.904
EEF15152.1	fliL	CAMRE0001_1851	CAMRE0001_2591	Hypothetical protein.	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.922
EEF15152.1	fliM	CAMRE0001_1851	CAMRE0001_1096	Hypothetical protein.	Flagellar motor switch protein FliM; Identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397.	0.923
EEF15152.1	fliN	CAMRE0001_1851	CAMRE0001_1095	Hypothetical protein.	Flagellar motor switch protein FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	0.974
EEF15152.1	fliN-2	CAMRE0001_1851	CAMRE0001_1850	Hypothetical protein.	Flagellar motor switch protein FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	0.943
EEF15152.1	fliP	CAMRE0001_1851	CAMRE0001_0994	Hypothetical protein.	Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.	0.904
EEF15152.1	fliQ	CAMRE0001_1851	CAMRE0001_0360	Hypothetical protein.	Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.904
EEF15152.1	fliR	CAMRE0001_1851	CAMRE0001_1680	Hypothetical protein.	Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	0.900
flgE	EEF15152.1	CAMRE0001_0303	CAMRE0001_1851	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM PF07559; match to protein family HMM TIGR02489; match to protein family HMM TIGR03506.	Hypothetical protein.	0.950
flgE	flhB	CAMRE0001_0303	CAMRE0001_1791	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM PF07559; match to protein family HMM TIGR02489; match to protein family HMM TIGR03506.	Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	0.986
flgE	fliG	CAMRE0001_0303	CAMRE0001_1897	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM PF07559; match to protein family HMM TIGR02489; match to protein family HMM TIGR03506.	Flagellar motor switch protein FliG; Identified by match to protein family HMM PF01706; match to protein family HMM TIGR00207.	0.997
flgE	fliL	CAMRE0001_0303	CAMRE0001_2591	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM PF07559; match to protein family HMM TIGR02489; match to protein family HMM TIGR03506.	Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.989
flgE	fliM	CAMRE0001_0303	CAMRE0001_1096	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM PF07559; match to protein family HMM TIGR02489; match to protein family HMM TIGR03506.	Flagellar motor switch protein FliM; Identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397.	0.996
flgE	fliN	CAMRE0001_0303	CAMRE0001_1095	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM PF07559; match to protein family HMM TIGR02489; match to protein family HMM TIGR03506.	Flagellar motor switch protein FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	0.999
flgE	fliN-2	CAMRE0001_0303	CAMRE0001_1850	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM PF07559; match to protein family HMM TIGR02489; match to protein family HMM TIGR03506.	Flagellar motor switch protein FliN; Identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480.	0.986
flgE	fliP	CAMRE0001_0303	CAMRE0001_0994	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM PF07559; match to protein family HMM TIGR02489; match to protein family HMM TIGR03506.	Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.	0.997
flgE	fliQ	CAMRE0001_0303	CAMRE0001_0360	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM PF07559; match to protein family HMM TIGR02489; match to protein family HMM TIGR03506.	Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.998
flgE	fliR	CAMRE0001_0303	CAMRE0001_1680	Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM PF07559; match to protein family HMM TIGR02489; match to protein family HMM TIGR03506.	Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	0.987