STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF13334.1dUTP diphosphatase; Identified by match to protein family HMM PF08761. (231 aa)    
Predicted Functional Partners:
EEF13333.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
EEF14146.1
Hypothetical protein.
  
     0.669
EEF13289.1
Hypothetical protein.
  
     0.669
EEF13335.1
Hypothetical protein.
  
    0.665
EEF14965.1
Identified by match to protein family HMM PF00034.
  
     0.648
EEF13327.1
Hypothetical protein.
       0.607
EEF14646.1
Hypothetical protein; Belongs to the UPF0250 family.
  
     0.582
EEF12606.1
Prepilin-type cleavage/methylation N-terminal domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
     0.580
EEF13396.1
Thioredoxin domain protein.
  
     0.561
EEF15486.1
Hypothetical protein.
  
     0.560
Your Current Organism:
Campylobacter rectus
NCBI taxonomy Id: 553218
Other names: C. rectus RM3267, Campylobacter rectus RM3267, Campylobacter rectus str. RM3267, Campylobacter rectus strain RM3267
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