STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF14415.1Putative zinc ribbon domain protein; Identified by match to protein family HMM PF02591. (236 aa)    
Predicted Functional Partners:
EEF14412.1
Dinuclear metal center protein, YbgI family; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.
  
 0.964
glyQ
glycine--tRNA ligase, alpha subunit; Identified by match to protein family HMM PF02091; match to protein family HMM TIGR00388.
       0.783
EEF14410.1
Transcriptional regulator, effector binding domain protein; Identified by match to protein family HMM PF06445.
       0.741
EEF14345.1
Hypothetical protein.
       0.741
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.737
EEF14318.1
Peptidase, U32 family; Identified by match to protein family HMM PF01136.
       0.737
EEF14358.1
Hypothetical protein.
       0.737
ydaH
AbgT transporter family; Identified by match to protein family HMM PF03806.
       0.722
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.560
EEF14404.1
Pseudouridine synthase, RluA family; Identified by match to protein family HMM PF00849.
       0.550
Your Current Organism:
Campylobacter rectus
NCBI taxonomy Id: 553218
Other names: C. rectus RM3267, Campylobacter rectus RM3267, Campylobacter rectus str. RM3267, Campylobacter rectus strain RM3267
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.