STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF13021.1Fimbrial assembly protein PilN; Identified by match to protein family HMM PF05137. (174 aa)    
Predicted Functional Partners:
EEF13193.1
Hypothetical protein.
  
 0.976
EEF13218.1
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.
  
 
 0.898
EEF13221.1
Bacterial type II secretion system domain protein F; Identified by match to protein family HMM PF00482.
   
 
 0.799
EEF13048.1
Hypothetical protein.
       0.783
EEF13037.1
Hypothetical protein.
       0.783
EEF13043.1
Identified by match to protein family HMM PF04028.
       0.644
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.644
EEF13026.1
Hypothetical protein.
       0.644
EEF13020.1
Hypothetical protein.
       0.620
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
       0.479
Your Current Organism:
Campylobacter rectus
NCBI taxonomy Id: 553218
Other names: C. rectus RM3267, Campylobacter rectus RM3267, Campylobacter rectus str. RM3267, Campylobacter rectus strain RM3267
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.