STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET79978.1Outer membrane efflux protein; Identified by match to protein family HMM PF02321. (438 aa)    
Predicted Functional Partners:
EET79977.1
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.933
macB
ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.906
EET79976.1
RND transporter, HAE1 family; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.883
EET80686.1
Hypothetical protein.
  
     0.767
EET80584.1
Thioredoxin domain protein.
  
     0.766
EET79818.1
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
     0.760
EET79783.1
Hypothetical protein.
  
     0.760
EET80200.1
Rod shape-determining protein MreC.
  
     0.734
EET79788.1
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
  
    0.733
EET79340.1
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
  
 0.724
Your Current Organism:
Campylobacter showae RM3277
NCBI taxonomy Id: 553219
Other names: C. showae RM3277, Campylobacter showae str. RM3277, Campylobacter showae strain RM3277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.