STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET79173.1Identified by match to protein family HMM PF00881. (209 aa)    
Predicted Functional Partners:
EET80165.1
Transporter, major facilitator family protein; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.
   
 
 0.821
EET78988.1
long-chain-fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501.
   
   0.777
EET79140.1
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
  
  
 0.751
EET79400.1
Identified by match to protein family HMM PF00903.
  
  
 0.666
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. Belongs to the DHBP synthase family.
  
 
 0.527
ribF
Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01467; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.
 
  
 0.527
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
  
  
 0.503
EET79172.1
Disulfide bond formation protein DsbB; Identified by match to protein family HMM PF02600.
       0.477
EET79171.1
Hypothetical protein.
       0.471
EET79174.1
Hypothetical protein; Identified by glimmer; putative.
       0.457
Your Current Organism:
Campylobacter showae RM3277
NCBI taxonomy Id: 553219
Other names: C. showae RM3277, Campylobacter showae str. RM3277, Campylobacter showae strain RM3277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.