STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET78987.1Outer membrane protein transport protein, Ompp1/FadL/TodX family; Identified by match to protein family HMM PF03349. (415 aa)    
Predicted Functional Partners:
EET78988.1
long-chain-fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501.
  
  
 0.840
EET78985.1
Hypothetical protein.
       0.796
nfo
Apurinic endonuclease (APN1); Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
       0.796
EET78989.1
ATPase, AAA family; Identified by match to protein family HMM PF00004.
       0.786
EET80165.1
Transporter, major facilitator family protein; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.
  
  
 0.596
EET78984.1
Hypothetical protein; Identified by glimmer; putative.
       0.472
EET78983.1
Integral membrane protein TerC family; Identified by match to protein family HMM PF03741.
       0.445
EET78990.1
Hypothetical protein; Identified by glimmer; putative.
       0.445
Your Current Organism:
Campylobacter showae RM3277
NCBI taxonomy Id: 553219
Other names: C. showae RM3277, Campylobacter showae str. RM3277, Campylobacter showae strain RM3277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.