STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET79087.1Iron chelate uptake ABC transporter, FeCT family, permease protein; Identified by match to protein family HMM PF00950; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (343 aa)    
Predicted Functional Partners:
EET79088.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  0.925
EET79086.1
Hypothetical protein.
 
  0.923
EET78887.1
Periplasmic binding protein; Identified by match to protein family HMM PF01497.
 
  0.885
EET78886.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  0.849
EET79874.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  0.818
EET79253.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  0.787
EET79250.1
Periplasmic binding protein; Identified by match to protein family HMM PF01497.
  
  0.761
EET80041.1
Periplasmic binding protein; Identified by match to protein family HMM PF01497.
  
  0.754
EET78584.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  0.736
EET80043.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  0.736
Your Current Organism:
Campylobacter showae RM3277
NCBI taxonomy Id: 553219
Other names: C. showae RM3277, Campylobacter showae str. RM3277, Campylobacter showae strain RM3277
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