STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET80518.1Hypothetical protein; Identified by glimmer; putative. (364 aa)    
Predicted Functional Partners:
EET79960.1
TrkA C-terminal domain protein; Identified by match to protein family HMM PF02080.
  
     0.774
EET79285.1
Hypothetical protein.
  
     0.774
EET79194.1
Identified by match to protein family HMM PF04368.
  
     0.773
yfiO
Outer membrane assembly lipoprotein YfiO; Identified by match to protein family HMM TIGR03302.
  
     0.773
ctsW
Transformation system protein.
  
     0.773
EET80717.1
Hypothetical protein.
  
     0.773
EET80200.1
Rod shape-determining protein MreC.
  
     0.770
atpF
ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.770
EET80460.1
RDD family protein; Identified by match to protein family HMM PF06271.
  
     0.769
EET80842.1
Hypothetical protein.
  
     0.769
Your Current Organism:
Campylobacter showae RM3277
NCBI taxonomy Id: 553219
Other names: C. showae RM3277, Campylobacter showae str. RM3277, Campylobacter showae strain RM3277
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