STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EET78754.1Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. (379 aa)    
Predicted Functional Partners:
EET78752.1
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
   
 0.919
EET78755.1
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
 
  0.890
EET78756.1
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
    
0.856
EET78751.1
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
 
  
 0.853
EET79586.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.845
EET78753.1
Oligosaccharyl transferase STT3 subunit; Identified by match to protein family HMM PF02516.
     
 0.798
EET78758.1
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
  
 
 0.765
EET78761.1
Nucleotide sugar dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.
  
  
 0.752
EET78779.1
Glycosyltransferase, group 1 family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00534.
  
 
  0.743
galE
UDP-glucose 4-epimerase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.728
Your Current Organism:
Campylobacter showae RM3277
NCBI taxonomy Id: 553219
Other names: C. showae RM3277, Campylobacter showae str. RM3277, Campylobacter showae strain RM3277
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.