STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ12245.1Polyhydroxyalkanoate synthesis regulator phasin. (99 aa)    
Predicted Functional Partners:
SDR14297.1
Uncharacterized protein YoxC, contains an MCP-like domain.
  
     0.644
SDQ12226.1
Hypothetical protein.
       0.547
SDQ77150.1
ABC-2 type transport system permease protein.
  
     0.519
SDQ63182.1
Protein of unknown function.
  
     0.487
SDQ94851.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.487
SDR01123.1
Transcriptional regulator, TetR family.
  
     0.481
SDQ45601.1
Tetratricopeptide repeat-containing protein.
  
     0.466
SDR01772.1
Protein of unknown function.
  
     0.456
SDQ92677.1
2-octaprenylphenol hydroxylase.
 
     0.448
SDQ50519.1
Competence protein ComGD.
  
     0.430
Your Current Organism:
Virgibacillus salinus
NCBI taxonomy Id: 553311
Other names: CCM 7562, CECT 7439, DSM 21756, V. salinus, Virgibacillus salinus Carrasco et al. 2009, Virgibacillus sp. XH22, strain XH-22, strain XH22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.