STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ19086.1Alpha-1,2-mannosidase, putative. (1706 aa)    
Predicted Functional Partners:
SDQ23212.1
Hypothetical protein.
    
   0.807
SDR01024.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
  
  
 0.749
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.742
SDR01044.1
beta-N-acetylhexosaminidase; Belongs to the glycosyl hydrolase 3 family.
  
 
  0.695
SDQ49540.1
Hypothetical protein.
  
 
 
 0.665
SDR00999.1
Lysophospholipase L1.
  
 
  0.661
SDQ18919.1
Endo-1,4-beta-xylanase.
  
  
 0.636
SDQ95209.1
M6 family metalloprotease domain-containing protein.
  
 0.619
SDQ06189.1
Protein of unknown function.
   
  0.614
SDQ25490.1
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
   
  0.614
Your Current Organism:
Virgibacillus salinus
NCBI taxonomy Id: 553311
Other names: CCM 7562, CECT 7439, DSM 21756, V. salinus, Virgibacillus salinus Carrasco et al. 2009, Virgibacillus sp. XH22, strain XH-22, strain XH22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.