STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ20061.1Aminotransferase. (392 aa)    
Predicted Functional Partners:
SDQ09371.1
Glutamate synthase (NADH) large subunit.
    
 0.899
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
 0.866
SDQ24489.1
Predicted amidohydrolase.
 
 
 0.841
SDQ11652.1
Methionine-gamma-lyase.
   
 
 0.838
SDQ83236.1
Betaine-homocysteine S-methyltransferase.
   
 
 0.834
SDR08931.1
Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase.
  
 0.826
SDQ43904.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.815
SDQ56294.1
Glycine/D-amino acid oxidase.
  
 
 0.776
SDQ83209.1
Methionine synthase II (cobalamin-independent).
   
 
 0.771
SDQ42167.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase /chorismate mutase.
    
  0.768
Your Current Organism:
Virgibacillus salinus
NCBI taxonomy Id: 553311
Other names: CCM 7562, CECT 7439, DSM 21756, V. salinus, Virgibacillus salinus Carrasco et al. 2009, Virgibacillus sp. XH22, strain XH-22, strain XH22
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