STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxuA-2Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (357 aa)    
Predicted Functional Partners:
uxaC
D-glucuronate isomerase.
 
 
 0.959
SDQ21059.1
2-keto-3-deoxy-phosphogluconate aldolase.
 
   
 0.859
SDQ21037.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.791
SDQ16669.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
  0.726
SDQ20856.1
2-dehydro-3-deoxygluconokinase.
 
  
 0.702
SDQ21012.1
L-gulonate 5-dehydrogenase.
 
  
 0.661
SDQ18468.1
5-dehydro-2-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.641
SDQ20967.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.635
SDQ20922.1
Ureidoglycolate dehydrogenase (NAD+); Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.623
SDQ16689.1
2-dehydro-3-deoxygluconokinase.
 
  
 0.602
Your Current Organism:
Virgibacillus salinus
NCBI taxonomy Id: 553311
Other names: CCM 7562, CECT 7439, DSM 21756, V. salinus, Virgibacillus salinus Carrasco et al. 2009, Virgibacillus sp. XH22, strain XH-22, strain XH22
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