STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ27280.1Isocitrate lyase. (426 aa)    
Predicted Functional Partners:
SDQ27270.1
Malate synthase; Belongs to the malate synthase family.
 
 0.999
SDQ58202.1
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
   
 
 0.913
SDQ28754.1
Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.910
SDQ20411.1
Gluconate 2-dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.834
SDQ12380.1
Phosphotransacetylase.
   
 
 0.826
SDQ51918.1
Phosphate butyryltransferase.
   
 
 0.826
SDQ18483.1
2-keto-3-deoxy-phosphogluconate aldolase.
     
 0.821
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
   
  
 0.811
SDQ66336.1
Aconitase.
   
 
 0.806
SDR03092.1
Aconitase.
   
 
 0.806
Your Current Organism:
Virgibacillus salinus
NCBI taxonomy Id: 553311
Other names: CCM 7562, CECT 7439, DSM 21756, V. salinus, Virgibacillus salinus Carrasco et al. 2009, Virgibacillus sp. XH22, strain XH-22, strain XH22
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