Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDQ11862.1 | SDQ53701.1 | SAMN05216231_0517 | SAMN05216231_1843 | ATP-dependent DNA helicase, RecQ-like. | ATP-dependent DNA helicase RecQ. | 0.918 |
SDQ11862.1 | SDQ55954.1 | SAMN05216231_0517 | SAMN05216231_1935 | ATP-dependent DNA helicase, RecQ-like. | Exonuclease SbcC. | 0.905 |
SDQ11862.1 | SDQ57564.1 | SAMN05216231_0517 | SAMN05216231_2006 | ATP-dependent DNA helicase, RecQ-like. | 5'-3' exonuclease. | 0.913 |
SDQ11862.1 | SDQ85965.1 | SAMN05216231_0517 | SAMN05216231_2807 | ATP-dependent DNA helicase, RecQ-like. | DNA repair exonuclease SbcCD nuclease subunit. | 0.885 |
SDQ11862.1 | SDR03172.1 | SAMN05216231_0517 | SAMN05216231_3356 | ATP-dependent DNA helicase, RecQ-like. | Putative phosphoesterase. | 0.901 |
SDQ11862.1 | polA | SAMN05216231_0517 | SAMN05216231_1490 | ATP-dependent DNA helicase, RecQ-like. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.950 |
SDQ11862.1 | recA | SAMN05216231_0517 | SAMN05216231_2063 | ATP-dependent DNA helicase, RecQ-like. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.919 |
SDQ11862.1 | sbcD | SAMN05216231_0517 | SAMN05216231_1934 | ATP-dependent DNA helicase, RecQ-like. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.890 |
SDQ11862.1 | topB | SAMN05216231_0517 | SAMN05216231_1027 | ATP-dependent DNA helicase, RecQ-like. | DNA topoisomerase-3; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.959 |
SDQ12104.1 | SDQ55954.1 | SAMN05216231_0531 | SAMN05216231_1935 | Bifunctional non-homologous end joining protein LigD. | Exonuclease SbcC. | 0.793 |
SDQ12104.1 | SDQ57564.1 | SAMN05216231_0531 | SAMN05216231_2006 | Bifunctional non-homologous end joining protein LigD. | 5'-3' exonuclease. | 0.908 |
SDQ12104.1 | SDQ85965.1 | SAMN05216231_0531 | SAMN05216231_2807 | Bifunctional non-homologous end joining protein LigD. | DNA repair exonuclease SbcCD nuclease subunit. | 0.632 |
SDQ12104.1 | SDR03172.1 | SAMN05216231_0531 | SAMN05216231_3356 | Bifunctional non-homologous end joining protein LigD. | Putative phosphoesterase. | 0.577 |
SDQ12104.1 | polA | SAMN05216231_0531 | SAMN05216231_1490 | Bifunctional non-homologous end joining protein LigD. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.956 |
SDQ12104.1 | sbcD | SAMN05216231_0531 | SAMN05216231_1934 | Bifunctional non-homologous end joining protein LigD. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.577 |
SDQ53701.1 | SDQ11862.1 | SAMN05216231_1843 | SAMN05216231_0517 | ATP-dependent DNA helicase RecQ. | ATP-dependent DNA helicase, RecQ-like. | 0.918 |
SDQ53701.1 | SDQ55954.1 | SAMN05216231_1843 | SAMN05216231_1935 | ATP-dependent DNA helicase RecQ. | Exonuclease SbcC. | 0.905 |
SDQ53701.1 | SDQ57564.1 | SAMN05216231_1843 | SAMN05216231_2006 | ATP-dependent DNA helicase RecQ. | 5'-3' exonuclease. | 0.913 |
SDQ53701.1 | SDQ85965.1 | SAMN05216231_1843 | SAMN05216231_2807 | ATP-dependent DNA helicase RecQ. | DNA repair exonuclease SbcCD nuclease subunit. | 0.885 |
SDQ53701.1 | SDR03172.1 | SAMN05216231_1843 | SAMN05216231_3356 | ATP-dependent DNA helicase RecQ. | Putative phosphoesterase. | 0.885 |
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