STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ59260.1Nucleoside-binding protein. (372 aa)    
Predicted Functional Partners:
SDQ59236.1
Nucleoside ABC transporter ATP-binding protein.
 
 
 0.996
SDQ59190.1
Nucleoside ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.994
SDQ59212.1
Nucleoside ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.992
SDQ59284.1
Transcriptional regulator, GntR family.
  
    0.888
SDQ05687.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
 
  
  0.618
rbsA
Ribose ABC transporter ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
  
  0.563
SDQ13560.1
Cell wall-associated hydrolase, NlpC family.
   
    0.487
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.453
SDQ62803.1
Sporulation factor SpoIIGA. Unknown type peptidase. MEROPS family U04; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR.
   
    0.450
Your Current Organism:
Virgibacillus salinus
NCBI taxonomy Id: 553311
Other names: CCM 7562, CECT 7439, DSM 21756, V. salinus, Virgibacillus salinus Carrasco et al. 2009, Virgibacillus sp. XH22, strain XH-22, strain XH22
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