STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ87423.1Uncharacterized protein. (394 aa)    
Predicted Functional Partners:
SDQ87398.1
Spore germination protein PA.
       0.509
SDQ87372.1
Spore germination protein PB.
       0.499
SDQ87449.1
MFS transporter, NNP family, nitrate/nitrite transporter.
       0.470
SDQ87345.1
Spore germination protein PC.
       0.414
SDQ87320.1
Spore germination protein PD.
       0.413
SDQ87294.1
Spore germination protein PE.
       0.407
Your Current Organism:
Virgibacillus salinus
NCBI taxonomy Id: 553311
Other names: CCM 7562, CECT 7439, DSM 21756, V. salinus, Virgibacillus salinus Carrasco et al. 2009, Virgibacillus sp. XH22, strain XH-22, strain XH22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.