STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ94114.1Hypothetical protein. (394 aa)    
Predicted Functional Partners:
SDQ94140.1
Protein of unknown function.
 
     0.869
SDQ94088.1
HDIG domain-containing protein.
 
     0.735
SDQ07457.1
Tellurite resistance protein TehA.
  
    0.584
SDQ94452.1
Hypothetical protein.
  
     0.539
SDQ92203.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.523
SDQ78530.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
  
     0.483
SDQ26565.1
Protein of unknown function.
  
     0.470
SDQ93568.1
Uncharacterized protein YjbI, contains pentapeptide repeats.
  
     0.466
SDR12011.1
Transcriptional regulator.
 
     0.449
SDR00822.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
     0.426
Your Current Organism:
Virgibacillus salinus
NCBI taxonomy Id: 553311
Other names: CCM 7562, CECT 7439, DSM 21756, V. salinus, Virgibacillus salinus Carrasco et al. 2009, Virgibacillus sp. XH22, strain XH-22, strain XH22
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