Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDQ86515.1 | SDR02089.1 | SAMN05216231_2828 | SAMN05216231_3298 | Undecaprenyl-diphosphatase. | Fatty-acid peroxygenase. | 0.870 |
SDQ86515.1 | rplF | SAMN05216231_2828 | SAMN05216231_3794 | Undecaprenyl-diphosphatase. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.805 |
SDR02089.1 | SDQ86515.1 | SAMN05216231_3298 | SAMN05216231_2828 | Fatty-acid peroxygenase. | Undecaprenyl-diphosphatase. | 0.870 |
SDR02089.1 | acpP | SAMN05216231_3298 | SAMN05216231_2169 | Fatty-acid peroxygenase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.944 |
SDR02089.1 | polA | SAMN05216231_3298 | SAMN05216231_1490 | Fatty-acid peroxygenase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.966 |
SDR02089.1 | rplE | SAMN05216231_3298 | SAMN05216231_3797 | Fatty-acid peroxygenase. | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.814 |
SDR02089.1 | rplF | SAMN05216231_3298 | SAMN05216231_3794 | Fatty-acid peroxygenase. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.907 |
SDR02089.1 | rplO | SAMN05216231_3298 | SAMN05216231_3790 | Fatty-acid peroxygenase. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.889 |
SDR02089.1 | rpsB | SAMN05216231_3298 | SAMN05216231_2107 | Fatty-acid peroxygenase. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.818 |
SDR02089.1 | rpsC | SAMN05216231_3298 | SAMN05216231_3803 | Fatty-acid peroxygenase. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.815 |
SDR02089.1 | rpsD | SAMN05216231_3298 | SAMN05216231_1429 | Fatty-acid peroxygenase. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.822 |
SDR02089.1 | rpsL | SAMN05216231_3298 | SAMN05216231_3814 | Fatty-acid peroxygenase. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.829 |
acpP | SDR02089.1 | SAMN05216231_2169 | SAMN05216231_3298 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Fatty-acid peroxygenase. | 0.944 |
acpP | polA | SAMN05216231_2169 | SAMN05216231_1490 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.700 |
acpP | rplO | SAMN05216231_2169 | SAMN05216231_3790 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.906 |
acpP | rpsB | SAMN05216231_2169 | SAMN05216231_2107 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.494 |
acpP | rpsD | SAMN05216231_2169 | SAMN05216231_1429 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.648 |
acpP | rpsL | SAMN05216231_2169 | SAMN05216231_3814 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.673 |
polA | SDR02089.1 | SAMN05216231_1490 | SAMN05216231_3298 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | Fatty-acid peroxygenase. | 0.966 |
polA | acpP | SAMN05216231_1490 | SAMN05216231_2169 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.700 |
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