Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FQP86_01285 | FQP86_01290 | GCA_000591415_02629 | GCA_000591415_02628 | Unannotated protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Unannotated protein. | 0.977 |
FQP86_01285 | FQP86_01465 | GCA_000591415_02629 | GCA_000591415_00188 | Unannotated protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Unannotated protein. | 0.805 |
FQP86_01285 | FQP86_01470 | GCA_000591415_02629 | GCA_000591415_00189 | Unannotated protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Unannotated protein. | 0.755 |
FQP86_01285 | tolR | GCA_000591415_02629 | GCA_000591415_03089 | Unannotated protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Unannotated protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.832 |
FQP86_01290 | FQP86_01285 | GCA_000591415_02628 | GCA_000591415_02629 | Unannotated protein. | Unannotated protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.977 |
FQP86_01290 | FQP86_01470 | GCA_000591415_02628 | GCA_000591415_00189 | Unannotated protein. | Unannotated protein. | 0.924 |
FQP86_01290 | FQP86_05535 | GCA_000591415_02628 | GCA_000591415_01318 | Unannotated protein. | Unannotated protein. | 0.811 |
FQP86_01290 | lpxA | GCA_000591415_02628 | GCA_000591415_00975 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.458 |
FQP86_01290 | tolA | GCA_000591415_02628 | GCA_000591415_03090 | Unannotated protein. | Unannotated protein. | 0.805 |
FQP86_01290 | tolR | GCA_000591415_02628 | GCA_000591415_03089 | Unannotated protein. | Unannotated protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.630 |
FQP86_01465 | FQP86_01285 | GCA_000591415_00188 | GCA_000591415_02629 | Unannotated protein. | Unannotated protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.805 |
FQP86_01465 | FQP86_01470 | GCA_000591415_00188 | GCA_000591415_00189 | Unannotated protein. | Unannotated protein. | 0.987 |
FQP86_01465 | FQP86_05535 | GCA_000591415_00188 | GCA_000591415_01318 | Unannotated protein. | Unannotated protein. | 0.845 |
FQP86_01465 | kdsB | GCA_000591415_00188 | GCA_000591415_00184 | Unannotated protein. | Unannotated protein; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.702 |
FQP86_01465 | lpxA | GCA_000591415_00188 | GCA_000591415_00975 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.523 |
FQP86_01465 | lpxK | GCA_000591415_00188 | GCA_000591415_00186 | Unannotated protein. | Unannotated protein; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.811 |
FQP86_01465 | msbA | GCA_000591415_00188 | GCA_000591415_00187 | Unannotated protein. | Unannotated protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.721 |
FQP86_01465 | tolA | GCA_000591415_00188 | GCA_000591415_03090 | Unannotated protein. | Unannotated protein. | 0.805 |
FQP86_01465 | tolR | GCA_000591415_00188 | GCA_000591415_03089 | Unannotated protein. | Unannotated protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.487 |
FQP86_01470 | FQP86_01285 | GCA_000591415_00189 | GCA_000591415_02629 | Unannotated protein. | Unannotated protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.755 |
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