STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK65635.1L-proline dehydrogenase. (279 aa)    
Predicted Functional Partners:
SFK78222.1
Cytochrome c oxidase subunit I+III; Belongs to the heme-copper respiratory oxidase family.
   
 0.891
SFK65691.1
Proline racemase.
    
  0.758
lysJ
acetylornithine/LysW-gamma-L-lysine aminotransferase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. LysJ subfamily.
    
 0.742
SFK66101.1
Cytochrome d ubiquinol oxidase subunit I.
  
  
 0.702
proB
Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.
    
 0.692
SFL50591.1
Iron-sulfur cluster-binding protein.
  
 
  0.682
SFK67482.1
Sodium/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.677
SFK79235.1
solute:Na+ symporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.669
SFK99584.1
Sodium/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.666
SFL03948.1
Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.660
Your Current Organism:
Halogranum rubrum
NCBI taxonomy Id: 553466
Other names: CGMCC 1.7738, H. rubrum, Halobacteriaceae archaeon RO2-11, Halogranum rubrum Cui et al. 2010, JCM 15772, strain RO2-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.