STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK74595.1L-alanine-DL-glutamate epimerase. (346 aa)    
Predicted Functional Partners:
SFK74574.1
Uncharacterized conserved protein, NAD-dependent epimerase/dehydratase family.
 
     0.907
SFL01383.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.801
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC).
 
  
 0.610
menB
1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
 
  
 0.586
SFK77681.1
Uncharacterized conserved protein, NAD-dependent epimerase/dehydratase family.
 
     0.583
SFK74550.1
Ribosomal protein S18 acetylase RimI.
       0.533
SFK89124.1
2-dehydro-3-deoxyglucarate aldolase.
  
 
  0.460
SFL49119.1
2-dehydro-3-deoxyglucarate aldolase; Manually curated.
  
 
  0.460
SFL11140.1
Fructokinase.
 
  
 0.449
rpl4
Large subunit ribosomal protein L4e; Forms part of the polypeptide exit tunnel.
     
 0.432
Your Current Organism:
Halogranum rubrum
NCBI taxonomy Id: 553466
Other names: CGMCC 1.7738, H. rubrum, Halobacteriaceae archaeon RO2-11, Halogranum rubrum Cui et al. 2010, JCM 15772, strain RO2-11
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