STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK75149.1Uridine phosphorylase. (242 aa)    
Predicted Functional Partners:
SFL59435.1
Cytidine deaminase.
 
 
 0.879
SFK99962.1
Cytidine deaminase.
  
 
 0.851
SFL09521.1
AMP phosphorylase.
  
 
 0.828
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
  
 0.812
SFK75133.1
Universal stress protein family protein.
       0.807
udk
Uridine kinase.
    
 0.800
SFL67378.1
Cytidine deaminase; Manually curated.
  
 
 0.787
tdk
Thymidine kinase.
     
 0.775
SFL59479.1
Uridine phosphorylase.
  
  
 
0.756
surE
5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
 0.749
Your Current Organism:
Halogranum rubrum
NCBI taxonomy Id: 553466
Other names: CGMCC 1.7738, H. rubrum, Halobacteriaceae archaeon RO2-11, Halogranum rubrum Cui et al. 2010, JCM 15772, strain RO2-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.