STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK76423.1Pimeloyl-ACP methyl ester carboxylesterase. (298 aa)    
Predicted Functional Partners:
SFL38031.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
    
 0.797
SFK73455.1
Serine/threonine protein phosphatase 1.
  
 
  0.668
SFL39615.1
Phosphoesterase, MJ0936 family.
    
  0.619
SFK76404.1
Levansucrase; Belongs to the glycosyl hydrolase 68 family.
       0.610
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC).
  
 
 0.562
SFK77539.1
Nitroreductase.
  
 
 0.542
SFK76444.1
Hypothetical protein.
       0.526
SFL05957.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.486
SFL14144.1
Isochorismate synthase.
    
 0.485
SFK71434.1
Polyhydroxyalkanoate synthase.
     
 0.482
Your Current Organism:
Halogranum rubrum
NCBI taxonomy Id: 553466
Other names: CGMCC 1.7738, H. rubrum, Halobacteriaceae archaeon RO2-11, Halogranum rubrum Cui et al. 2010, JCM 15772, strain RO2-11
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