STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK76701.1Hypothetical protein. (334 aa)    
Predicted Functional Partners:
SFK76718.1
Hypothetical protein.
       0.800
SFK71351.1
Nucleotide-binding universal stress protein, UspA family.
 
      0.691
SFK76682.1
Predicted transcriptional regulator.
       0.596
SFK76664.1
Succinyl-diaminopimelate desuccinylase.
  
    0.579
SFL41298.1
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
    
  0.574
SFK76799.1
Glyoxylase, beta-lactamase superfamily II.
 
  
 0.497
SFK76757.1
Hypothetical protein.
 
   
 0.467
SFK76733.1
Predicted transcriptional regulator.
       0.455
SFK76859.1
Glyoxylase, beta-lactamase superfamily II.
 
  
 0.443
SFK76648.1
Thioredoxin.
       0.427
Your Current Organism:
Halogranum rubrum
NCBI taxonomy Id: 553466
Other names: CGMCC 1.7738, H. rubrum, Halobacteriaceae archaeon RO2-11, Halogranum rubrum Cui et al. 2010, JCM 15772, strain RO2-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.