STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK81383.1Alcohol dehydrogenase. (355 aa)    
Predicted Functional Partners:
SFK81406.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
    
  0.581
SFL24656.1
Threonine dehydratase.
   
 
  0.549
SFL35284.1
Threonine dehydratase.
   
 
  0.549
SFL60540.1
Threonine dehydratase.
   
 
  0.549
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.504
SFL33529.1
L-iditol 2-dehydrogenase.
 
 
0.497
SFL03595.1
Alcohol dehydrogenase, propanol-preferring.
  
  
 
0.495
SFK82435.1
Alcohol dehydrogenase.
 
 
0.494
SFL28843.1
Tetratricopeptide repeat-containing protein.
    
 0.493
SFL45278.1
Benzoylformate decarboxylase; Belongs to the TPP enzyme family.
     
 0.490
Your Current Organism:
Halogranum rubrum
NCBI taxonomy Id: 553466
Other names: CGMCC 1.7738, H. rubrum, Halobacteriaceae archaeon RO2-11, Halogranum rubrum Cui et al. 2010, JCM 15772, strain RO2-11
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.