STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK88910.1Iron-regulated ABC transporter membrane component SufB. (486 aa)    
Predicted Functional Partners:
SFL04992.1
Fe-S cluster assembly ATP-binding protein.
 0.997
SFL28889.1
Cysteine desulfurase / selenocysteine lyase.
 
 0.901
SFL28947.1
Nitrogen fixation protein NifU.
  
 
 0.865
SFK67320.1
Selenocysteine lyase/Cysteine desulfurase.
 
 0.861
SFL34788.1
Selenocysteine lyase/Cysteine desulfurase.
 
 0.768
SFL15043.1
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
  
 0.672
SFK84150.1
Iron-sulfur cluster assembly protein.
  
 
 0.634
SFK88920.1
Hypothetical protein.
       0.539
SFL49958.1
phenylacetate-CoA oxygenase, PaaJ subunit.
 
   
 0.490
psmA
Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
  
    0.402
Your Current Organism:
Halogranum rubrum
NCBI taxonomy Id: 553466
Other names: CGMCC 1.7738, H. rubrum, Halobacteriaceae archaeon RO2-11, Halogranum rubrum Cui et al. 2010, JCM 15772, strain RO2-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.