STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL00130.1Conserved repeat domain-containing protein. (424 aa)    
Predicted Functional Partners:
SFL00148.1
Hypothetical protein.
       0.789
SFL00114.1
Hypothetical protein.
       0.787
SFL00099.1
Protein of unknown function.
       0.779
SFK65004.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
  
     0.650
SFK82373.1
Protein of unknown function DUF58.
  
     0.588
SFL00166.1
Hypothetical protein.
       0.508
SFK99990.1
Hypothetical protein.
       0.475
SFL00003.1
Hypothetical protein.
       0.475
SFL00019.1
Hypothetical protein.
       0.475
SFL00035.1
Hypothetical protein.
       0.475
Your Current Organism:
Halogranum rubrum
NCBI taxonomy Id: 553466
Other names: CGMCC 1.7738, H. rubrum, Halobacteriaceae archaeon RO2-11, Halogranum rubrum Cui et al. 2010, JCM 15772, strain RO2-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.