Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFK63566.1 | SFL01016.1 | SAMN04487950_0298 | SAMN04487950_1922 | Gamma-glutamyltranspeptidase / glutathione hydrolase. | Amidohydrolase; Belongs to the peptidase M20A family. | 0.462 |
SFK63566.1 | SFL35300.1 | SAMN04487950_0298 | SAMN04487950_3506 | Gamma-glutamyltranspeptidase / glutathione hydrolase. | Aminobenzoyl-glutamate utilization protein A. | 0.432 |
SFK65691.1 | SFL01016.1 | SAMN04487950_0426 | SAMN04487950_1922 | Proline racemase. | Amidohydrolase; Belongs to the peptidase M20A family. | 0.537 |
SFK65691.1 | SFL35300.1 | SAMN04487950_0426 | SAMN04487950_3506 | Proline racemase. | Aminobenzoyl-glutamate utilization protein A. | 0.592 |
SFK65691.1 | gatB | SAMN04487950_0426 | SAMN04487950_1919 | Proline racemase. | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.655 |
SFL00983.1 | SFL01002.1 | SAMN04487950_1920 | SAMN04487950_1921 | Protein of unknown function. | Hypothetical protein. | 0.951 |
SFL00983.1 | SFL01016.1 | SAMN04487950_1920 | SAMN04487950_1922 | Protein of unknown function. | Amidohydrolase; Belongs to the peptidase M20A family. | 0.907 |
SFL00983.1 | SFL01034.1 | SAMN04487950_1920 | SAMN04487950_1923 | Protein of unknown function. | Hypothetical protein. | 0.482 |
SFL00983.1 | gatB | SAMN04487950_1920 | SAMN04487950_1919 | Protein of unknown function. | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.472 |
SFL01002.1 | SFL00983.1 | SAMN04487950_1921 | SAMN04487950_1920 | Hypothetical protein. | Protein of unknown function. | 0.951 |
SFL01002.1 | SFL01016.1 | SAMN04487950_1921 | SAMN04487950_1922 | Hypothetical protein. | Amidohydrolase; Belongs to the peptidase M20A family. | 0.913 |
SFL01002.1 | SFL01034.1 | SAMN04487950_1921 | SAMN04487950_1923 | Hypothetical protein. | Hypothetical protein. | 0.482 |
SFL01002.1 | gatB | SAMN04487950_1921 | SAMN04487950_1919 | Hypothetical protein. | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.472 |
SFL01016.1 | SFK63566.1 | SAMN04487950_1922 | SAMN04487950_0298 | Amidohydrolase; Belongs to the peptidase M20A family. | Gamma-glutamyltranspeptidase / glutathione hydrolase. | 0.462 |
SFL01016.1 | SFK65691.1 | SAMN04487950_1922 | SAMN04487950_0426 | Amidohydrolase; Belongs to the peptidase M20A family. | Proline racemase. | 0.537 |
SFL01016.1 | SFL00983.1 | SAMN04487950_1922 | SAMN04487950_1920 | Amidohydrolase; Belongs to the peptidase M20A family. | Protein of unknown function. | 0.907 |
SFL01016.1 | SFL01002.1 | SAMN04487950_1922 | SAMN04487950_1921 | Amidohydrolase; Belongs to the peptidase M20A family. | Hypothetical protein. | 0.913 |
SFL01016.1 | SFL01034.1 | SAMN04487950_1922 | SAMN04487950_1923 | Amidohydrolase; Belongs to the peptidase M20A family. | Hypothetical protein. | 0.482 |
SFL01016.1 | SFL05820.1 | SAMN04487950_1922 | SAMN04487950_2221 | Amidohydrolase; Belongs to the peptidase M20A family. | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. | 0.427 |
SFL01016.1 | SFL35300.1 | SAMN04487950_1922 | SAMN04487950_3506 | Amidohydrolase; Belongs to the peptidase M20A family. | Aminobenzoyl-glutamate utilization protein A. | 0.648 |
page 1 of 3