Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFL12637.1 | SFL15920.1 | SAMN04487950_2611 | SAMN04487950_2791 | Putative transcription factor. | Putative phosphoesterase. | 0.651 |
SFL12637.1 | SFL15936.1 | SAMN04487950_2611 | SAMN04487950_2792 | Putative transcription factor. | Hypothetical protein. | 0.447 |
SFL12637.1 | SFL15950.1 | SAMN04487950_2611 | SAMN04487950_2793 | Putative transcription factor. | Replication factor A1. | 0.508 |
SFL12637.1 | SFL25333.1 | SAMN04487950_2611 | SAMN04487950_3060 | Putative transcription factor. | Riboflavin kinase. | 0.558 |
SFL12637.1 | SFL25864.1 | SAMN04487950_2611 | SAMN04487950_3087 | Putative transcription factor. | Putative membrane protein. | 0.523 |
SFL12637.1 | SFL39946.1 | SAMN04487950_2611 | SAMN04487950_3648 | Putative transcription factor. | Cell division control protein 6; Involved in regulation of DNA replication. | 0.498 |
SFL12637.1 | atpF | SAMN04487950_2611 | SAMN04487950_3070 | Putative transcription factor. | V/A-type H+-transporting ATPase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.578 |
SFL12637.1 | endA | SAMN04487950_2611 | SAMN04487950_3536 | Putative transcription factor. | tRNA-intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp. | 0.408 |
SFL12637.1 | priL | SAMN04487950_2611 | SAMN04487950_3235 | Putative transcription factor. | DNA primase large subunit; Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair. | 0.436 |
SFL15866.1 | SFL15920.1 | SAMN04487950_2787 | SAMN04487950_2791 | ATP-dependent helicase Lhr and Lhr-like helicase. | Putative phosphoesterase. | 0.693 |
SFL15866.1 | SFL15950.1 | SAMN04487950_2787 | SAMN04487950_2793 | ATP-dependent helicase Lhr and Lhr-like helicase. | Replication factor A1. | 0.437 |
SFL15866.1 | SFL25333.1 | SAMN04487950_2787 | SAMN04487950_3060 | ATP-dependent helicase Lhr and Lhr-like helicase. | Riboflavin kinase. | 0.502 |
SFL15866.1 | SFL25864.1 | SAMN04487950_2787 | SAMN04487950_3087 | ATP-dependent helicase Lhr and Lhr-like helicase. | Putative membrane protein. | 0.565 |
SFL15866.1 | SFL39946.1 | SAMN04487950_2787 | SAMN04487950_3648 | ATP-dependent helicase Lhr and Lhr-like helicase. | Cell division control protein 6; Involved in regulation of DNA replication. | 0.533 |
SFL15866.1 | endA | SAMN04487950_2787 | SAMN04487950_3536 | ATP-dependent helicase Lhr and Lhr-like helicase. | tRNA-intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp. | 0.457 |
SFL15866.1 | priL | SAMN04487950_2787 | SAMN04487950_3235 | ATP-dependent helicase Lhr and Lhr-like helicase. | DNA primase large subunit; Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair. | 0.445 |
SFL15920.1 | SFL12637.1 | SAMN04487950_2791 | SAMN04487950_2611 | Putative phosphoesterase. | Putative transcription factor. | 0.651 |
SFL15920.1 | SFL15866.1 | SAMN04487950_2791 | SAMN04487950_2787 | Putative phosphoesterase. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.693 |
SFL15920.1 | SFL15936.1 | SAMN04487950_2791 | SAMN04487950_2792 | Putative phosphoesterase. | Hypothetical protein. | 0.905 |
SFL15920.1 | SFL15950.1 | SAMN04487950_2791 | SAMN04487950_2793 | Putative phosphoesterase. | Replication factor A1. | 0.910 |
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