Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFK98768.1 | SFL16351.1 | SAMN04487950_1772 | SAMN04487950_2819 | Hypothetical protein. | Hypothetical protein. | 0.650 |
SFK98768.1 | SFL27303.1 | SAMN04487950_1772 | SAMN04487950_3171 | Hypothetical protein. | Hypothetical protein; Manually curated. | 0.421 |
SFL16351.1 | SFK98768.1 | SAMN04487950_2819 | SAMN04487950_1772 | Hypothetical protein. | Hypothetical protein. | 0.650 |
SFL16351.1 | SFL16374.1 | SAMN04487950_2819 | SAMN04487950_2820 | Hypothetical protein. | Uncharacterised protein family UPF0058. | 0.566 |
SFL16351.1 | SFL27303.1 | SAMN04487950_2819 | SAMN04487950_3171 | Hypothetical protein. | Hypothetical protein; Manually curated. | 0.553 |
SFL16351.1 | mutS | SAMN04487950_2819 | SAMN04487950_0090 | Hypothetical protein. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.813 |
SFL16351.1 | mutS-2 | SAMN04487950_2819 | SAMN04487950_1800 | Hypothetical protein. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.855 |
SFL16351.1 | mutS2 | SAMN04487950_2819 | SAMN04487950_3192 | Hypothetical protein. | dsDNA-specific endonuclease/ATPase MutS2; Has ATPase and non-specific DNA-binding activities. Belongs to the DNA mismatch repair MutS family. Archaeal Muts2 subfamily. | 0.796 |
SFL16351.1 | rpl15 | SAMN04487950_2819 | SAMN04487950_0774 | Hypothetical protein. | Large subunit ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.608 |
SFL16351.1 | rpl3 | SAMN04487950_2819 | SAMN04487950_0796 | Hypothetical protein. | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.616 |
SFL16351.1 | rps15 | SAMN04487950_2819 | SAMN04487950_2354 | Hypothetical protein. | Small subunit ribosomal protein S15. | 0.565 |
SFL16351.1 | rps4 | SAMN04487950_2819 | SAMN04487950_1416 | Hypothetical protein. | Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.627 |
SFL16374.1 | SFL16351.1 | SAMN04487950_2820 | SAMN04487950_2819 | Uncharacterised protein family UPF0058. | Hypothetical protein. | 0.566 |
SFL27303.1 | SFK98768.1 | SAMN04487950_3171 | SAMN04487950_1772 | Hypothetical protein; Manually curated. | Hypothetical protein. | 0.421 |
SFL27303.1 | SFL16351.1 | SAMN04487950_3171 | SAMN04487950_2819 | Hypothetical protein; Manually curated. | Hypothetical protein. | 0.553 |
SFL27303.1 | mutS2 | SAMN04487950_3171 | SAMN04487950_3192 | Hypothetical protein; Manually curated. | dsDNA-specific endonuclease/ATPase MutS2; Has ATPase and non-specific DNA-binding activities. Belongs to the DNA mismatch repair MutS family. Archaeal Muts2 subfamily. | 0.464 |
mutS | SFL16351.1 | SAMN04487950_0090 | SAMN04487950_2819 | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | Hypothetical protein. | 0.813 |
mutS | mutS-2 | SAMN04487950_0090 | SAMN04487950_1800 | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.761 |
mutS | mutS2 | SAMN04487950_0090 | SAMN04487950_3192 | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | dsDNA-specific endonuclease/ATPase MutS2; Has ATPase and non-specific DNA-binding activities. Belongs to the DNA mismatch repair MutS family. Archaeal Muts2 subfamily. | 0.818 |
mutS-2 | SFL16351.1 | SAMN04487950_1800 | SAMN04487950_2819 | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | Hypothetical protein. | 0.855 |
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