STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL32625.1Predicted arabinose efflux permease, MFS family. (411 aa)    
Predicted Functional Partners:
SFL50877.1
Predicted arabinose efflux permease, MFS family.
  
     0.511
SFK69572.1
4-hydroxybenzoate polyprenyltransferase.
  
     0.507
SFL32643.1
PAS domain S-box-containing protein.
       0.475
SFL09999.1
Predicted arabinose efflux permease, MFS family.
  
     0.452
SFL27905.1
Predicted arabinose efflux permease, MFS family.
  
     0.449
SFL22450.1
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 0.442
gap
Glyceraldehyde-3-phosphate dehydrogenase (NAD(P)).
    
 0.442
SFL55606.1
Hypothetical protein.
  
     0.433
SFL49658.1
Polysaccharide deacetylase.
  
    0.421
SFK60603.1
MFS transporter, NNP family, nitrate/nitrite transporter.
  
  
 0.410
Your Current Organism:
Halogranum rubrum
NCBI taxonomy Id: 553466
Other names: CGMCC 1.7738, H. rubrum, Halobacteriaceae archaeon RO2-11, Halogranum rubrum Cui et al. 2010, JCM 15772, strain RO2-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.