STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL35300.1Aminobenzoyl-glutamate utilization protein A. (430 aa)    
Predicted Functional Partners:
SFL35284.1
Threonine dehydratase.
  
    0.785
SFL01016.1
Amidohydrolase; Belongs to the peptidase M20A family.
  
     0.648
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine.
 
  
 0.595
SFK65691.1
Proline racemase.
 
  
 0.592
SFL35320.1
Phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.540
SFL35375.1
Cysteine-rich domain-containing protein.
       0.536
SFL05820.1
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase.
 
  
 0.527
SFL55747.1
N-carbamoyl-L-amino-acid hydrolase.
 
  
  0.468
SFL65720.1
Gamma-glutamyltranspeptidase / glutathione hydrolase.
 
  
  0.458
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.437
Your Current Organism:
Halogranum rubrum
NCBI taxonomy Id: 553466
Other names: CGMCC 1.7738, H. rubrum, Halobacteriaceae archaeon RO2-11, Halogranum rubrum Cui et al. 2010, JCM 15772, strain RO2-11
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