STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL54865.1Von Willebrand factor type A domain-containing protein. (794 aa)    
Predicted Functional Partners:
SFL54890.1
Aerotolerance regulator N-terminal.
 
     0.944
SFL54759.1
Protein of unknown function DUF58.
 
     0.910
SFL54835.1
Ciliary protein causing Leber congenital amaurosis disease.
 
     0.890
SFL54784.1
MoxR-like ATPase.
 
     0.830
SFL54806.1
Hypothetical protein.
       0.785
SFK82280.1
N-terminal double-transmembrane domain-containing protein.
 
     0.764
SFK82373.1
Protein of unknown function DUF58.
 
     0.693
SFL56971.1
Sulfatase.
  
     0.656
SFK82317.1
Laminin Domain II.
 
     0.551
SFL54734.1
Serine protease, subtilisin family; Belongs to the peptidase S8 family.
 
     0.533
Your Current Organism:
Halogranum rubrum
NCBI taxonomy Id: 553466
Other names: CGMCC 1.7738, H. rubrum, Halobacteriaceae archaeon RO2-11, Halogranum rubrum Cui et al. 2010, JCM 15772, strain RO2-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.