STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL68503.1Peptide/nickel transport system ATP-binding protein. (382 aa)    
Predicted Functional Partners:
SFL68430.1
Peptide/nickel transport system permease protein.
  0.939
SFL68477.1
Peptide/nickel transport system ATP-binding protein.
 
 
 
0.912
SFL68407.1
Peptide/nickel transport system permease protein.
 
  0.908
SFL55820.1
Peptide/nickel transport system permease protein.
  0.859
SFL15545.1
Peptide/nickel transport system permease protein.
  0.783
SFL65570.1
Peptide/nickel transport system permease protein.
  0.782
SFL68526.1
Hypothetical protein.
       0.773
SFL33051.1
Peptide/nickel transport system permease protein.
  0.769
SFL40849.1
Peptide/nickel transport system permease protein.
  0.766
SFK58503.1
Peptide/nickel transport system permease protein.
  0.752
Your Current Organism:
Halogranum rubrum
NCBI taxonomy Id: 553466
Other names: CGMCC 1.7738, H. rubrum, Halobacteriaceae archaeon RO2-11, Halogranum rubrum Cui et al. 2010, JCM 15772, strain RO2-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.