STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF75495.1Thiamine transport system permease protein. (587 aa)    
Predicted Functional Partners:
SFF75515.1
Thiamine transport system substrate-binding protein.
 
 
 0.988
SFF75474.1
Thiamine transport system ATP-binding protein.
 
 
  0.985
SFG48502.1
Spermidine/putrescine transport system ATP-binding protein.
 
 
  0.882
SFG43326.1
iron(III) transport system substrate-binding protein.
 
 
 0.809
SFG02336.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
  
 
 0.770
SFG85962.1
Multiple sugar transport system ATP-binding protein.
 
 
 0.656
SFG48564.1
Spermidine/putrescine transport system permease protein.
 
  
 
0.642
SFF75536.1
Predicted PurR-regulated permease PerM.
  
    0.566
SFG02879.1
Putative ABC transport system ATP-binding protein.
  
 
  0.561
SFG48531.1
Spermidine/putrescine transport system substrate-binding protein.
  
  
  0.497
Your Current Organism:
Halopelagius inordinatus
NCBI taxonomy Id: 553467
Other names: CGMCC 1.7739, H. inordinatus, Halobacteriaceae archaeon RO5-14, Halobacteriaceae archaeon RO5-2, Halopelagius inordinatus Cui et al. 2010, JCM 15773, strain RO5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.