Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFF80770.1 | SFF96280.1 | SAMN04488063_0364 | SAMN04488063_0945 | Glutamine synthetase. | Glutamate synthase (NADPH/NADH) large chain. | 0.887 |
SFF80770.1 | SFG06134.1 | SAMN04488063_0364 | SAMN04488063_1301 | Glutamine synthetase. | L-proline dehydrogenase. | 0.829 |
SFF80770.1 | carA | SAMN04488063_0364 | SAMN04488063_2100 | Glutamine synthetase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.842 |
SFF80770.1 | carB | SAMN04488063_0364 | SAMN04488063_2315 | Glutamine synthetase. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.873 |
SFF80770.1 | glmS | SAMN04488063_0364 | SAMN04488063_2712 | Glutamine synthetase. | Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.912 |
SFF80770.1 | glyA | SAMN04488063_0364 | SAMN04488063_1745 | Glutamine synthetase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. Also exhibits THF-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.862 |
SFF80770.1 | lysJ | SAMN04488063_0364 | SAMN04488063_0169 | Glutamine synthetase. | acetylornithine/LysW-gamma-L-lysine aminotransferase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. LysJ subfamily. | 0.895 |
SFF80770.1 | mfnA | SAMN04488063_0364 | SAMN04488063_0876 | Glutamine synthetase. | Tyrosine decarboxylase / aspartate 1-decarboxylase; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily. | 0.829 |
SFF80770.1 | purF | SAMN04488063_0364 | SAMN04488063_1897 | Glutamine synthetase. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. | 0.823 |
SFF80770.1 | speE | SAMN04488063_0364 | SAMN04488063_2420 | Glutamine synthetase. | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.886 |
SFF96280.1 | SFF80770.1 | SAMN04488063_0945 | SAMN04488063_0364 | Glutamate synthase (NADPH/NADH) large chain. | Glutamine synthetase. | 0.887 |
SFF96280.1 | SFG06134.1 | SAMN04488063_0945 | SAMN04488063_1301 | Glutamate synthase (NADPH/NADH) large chain. | L-proline dehydrogenase. | 0.736 |
SFF96280.1 | carA | SAMN04488063_0945 | SAMN04488063_2100 | Glutamate synthase (NADPH/NADH) large chain. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.775 |
SFF96280.1 | carB | SAMN04488063_0945 | SAMN04488063_2315 | Glutamate synthase (NADPH/NADH) large chain. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.839 |
SFF96280.1 | glmS | SAMN04488063_0945 | SAMN04488063_2712 | Glutamate synthase (NADPH/NADH) large chain. | Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.794 |
SFF96280.1 | glyA | SAMN04488063_0945 | SAMN04488063_1745 | Glutamate synthase (NADPH/NADH) large chain. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. Also exhibits THF-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.660 |
SFF96280.1 | mfnA | SAMN04488063_0945 | SAMN04488063_0876 | Glutamate synthase (NADPH/NADH) large chain. | Tyrosine decarboxylase / aspartate 1-decarboxylase; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily. | 0.766 |
SFF96280.1 | purF | SAMN04488063_0945 | SAMN04488063_1897 | Glutamate synthase (NADPH/NADH) large chain. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. | 0.773 |
SFG06134.1 | SFF80770.1 | SAMN04488063_1301 | SAMN04488063_0364 | L-proline dehydrogenase. | Glutamine synthetase. | 0.829 |
SFG06134.1 | SFF96280.1 | SAMN04488063_1301 | SAMN04488063_0945 | L-proline dehydrogenase. | Glutamate synthase (NADPH/NADH) large chain. | 0.736 |
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