STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF87745.1Hypothetical protein. (493 aa)    
Predicted Functional Partners:
SFG01400.1
Predicted PurR-regulated permease PerM.
  
     0.618
SFG56125.1
Protein of unknown function.
  
     0.564
SFF87772.1
CopG family transcriptional regulator, nickel-responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
       0.556
SFG58548.1
Hypothetical protein.
  
     0.551
SFG92270.1
Lysophospholipase L1.
  
     0.524
SFF87715.1
Fe2+ transport protein.
       0.508
SFG13497.1
Right handed beta helix region.
  
     0.497
SFG64301.1
Hypothetical protein.
  
     0.474
SFG71692.1
Phage integrase family protein.
  
     0.459
SFH06237.1
HTH DNA binding domain-containing protein.
  
     0.458
Your Current Organism:
Halopelagius inordinatus
NCBI taxonomy Id: 553467
Other names: CGMCC 1.7739, H. inordinatus, Halobacteriaceae archaeon RO5-14, Halobacteriaceae archaeon RO5-2, Halopelagius inordinatus Cui et al. 2010, JCM 15773, strain RO5-2
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.