STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF95921.1Fe-S cluster assembly protein SufB. (476 aa)    
Predicted Functional Partners:
SFF95899.1
Fe-S cluster assembly ATP-binding protein.
 
 0.999
SFF77491.1
Nitrogen fixation protein NifU.
 
  
 0.898
SFF77536.1
Cysteine desulfurase / selenocysteine lyase.
 
 
 0.894
SFG71184.1
Selenocysteine lyase/Cysteine desulfurase.
 
 
 0.859
SFG93035.1
Selenocysteine lyase/Cysteine desulfurase.
 
 
 0.852
SFF95948.1
Fe-S cluster assembly protein SufD.
 
    
0.835
SFG40734.1
Iron-sulfur cluster assembly protein.
  
 
 0.640
SFG45637.1
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
  
 
 0.614
SFF95978.1
Hypothetical protein.
       0.550
SFF95998.1
Iron (metal) dependent repressor, DtxR family.
     
 0.486
Your Current Organism:
Halopelagius inordinatus
NCBI taxonomy Id: 553467
Other names: CGMCC 1.7739, H. inordinatus, Halobacteriaceae archaeon RO5-14, Halobacteriaceae archaeon RO5-2, Halopelagius inordinatus Cui et al. 2010, JCM 15773, strain RO5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.