Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFG33638.1 | SFG33667.1 | SAMN04488063_1722 | SAMN04488063_1723 | Protein of unknown function. | Protein of unknown function. | 0.617 |
SFG33638.1 | SFG33694.1 | SAMN04488063_1722 | SAMN04488063_1724 | Protein of unknown function. | Hypothetical protein. | 0.471 |
SFG33667.1 | SFG33638.1 | SAMN04488063_1723 | SAMN04488063_1722 | Protein of unknown function. | Protein of unknown function. | 0.617 |
SFG33667.1 | SFG33694.1 | SAMN04488063_1723 | SAMN04488063_1724 | Protein of unknown function. | Hypothetical protein. | 0.631 |
SFG33667.1 | pelA | SAMN04488063_1723 | SAMN04488063_1725 | Protein of unknown function. | Protein pelota; May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity. | 0.480 |
SFG33694.1 | SFG33638.1 | SAMN04488063_1724 | SAMN04488063_1722 | Hypothetical protein. | Protein of unknown function. | 0.471 |
SFG33694.1 | SFG33667.1 | SAMN04488063_1724 | SAMN04488063_1723 | Hypothetical protein. | Protein of unknown function. | 0.631 |
SFG33694.1 | pelA | SAMN04488063_1724 | SAMN04488063_1725 | Hypothetical protein. | Protein pelota; May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity. | 0.532 |
pelA | SFG33667.1 | SAMN04488063_1725 | SAMN04488063_1723 | Protein pelota; May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity. | Protein of unknown function. | 0.480 |
pelA | SFG33694.1 | SAMN04488063_1725 | SAMN04488063_1724 | Protein pelota; May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity. | Hypothetical protein. | 0.532 |