STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG74048.1Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (448 aa)    
Predicted Functional Partners:
SFG56380.1
Pyridoxamine 5'-phosphate oxidase.
  
     0.577
SFG74074.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
 
    
0.534
SFH06237.1
HTH DNA binding domain-containing protein.
  
     0.477
SFG74018.1
Hypothetical protein.
       0.469
SFG71692.1
Phage integrase family protein.
  
     0.444
SFG00162.1
Hypothetical protein.
  
     0.418
SFG01547.1
PAS domain S-box-containing protein.
  
     0.414
SFG61603.1
Gas vesicle synthesis protein GvpO.
  
     0.400
Your Current Organism:
Halopelagius inordinatus
NCBI taxonomy Id: 553467
Other names: CGMCC 1.7739, H. inordinatus, Halobacteriaceae archaeon RO5-14, Halobacteriaceae archaeon RO5-2, Halopelagius inordinatus Cui et al. 2010, JCM 15773, strain RO5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.