STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG80345.1Small-conductance mechanosensitive channel. (318 aa)    
Predicted Functional Partners:
SFG05633.1
Mechanosensitive ion channel.
  
     0.592
SFG80321.1
N-glycosylase/DNA lyase.
       0.573
SFG05304.1
Mechanosensitive ion channel.
  
     0.528
SFF83174.1
Small-conductance mechanosensitive channel.
  
     0.525
SFG07712.1
Mechanosensitive ion channel.
  
     0.501
SFG59522.1
4-hydroxybenzoate polyprenyltransferase.
  
    0.472
SFG36666.1
Ion channel.
  
     0.438
SFF77282.1
Nonsense-mediated mRNA decay protein 3.
   
    0.435
SFG95364.1
Ion channel.
  
     0.435
SFG61956.1
NhaP-type Na+/H+ or K+/H+ antiporter.
 
   
 0.428
Your Current Organism:
Halopelagius inordinatus
NCBI taxonomy Id: 553467
Other names: CGMCC 1.7739, H. inordinatus, Halobacteriaceae archaeon RO5-14, Halobacteriaceae archaeon RO5-2, Halopelagius inordinatus Cui et al. 2010, JCM 15773, strain RO5-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.