STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR36648.1Demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase. (228 aa)    
Predicted Functional Partners:
SFR53832.1
Demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase.
  
  
 
0.780
SFR38807.1
NADH dehydrogenase subunit C.
   
 
 0.750
SFR43798.1
NADH dehydrogenase subunit D.
   
 
 0.750
SFR71677.1
NADH-quinone oxidoreductase subunit C/D.
   
 
 0.750
SFR39771.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
  
  
  0.714
SFR36653.1
V/A-type H+-transporting ATPase subunit G/H.
       0.582
SFR36661.1
V/A-type H+-transporting ATPase subunit I; Manually curated; Belongs to the V-ATPase 116 kDa subunit family.
       0.582
SFR40626.1
Methyltransferase domain-containing protein.
  
  
 
0.571
rps19p
Small subunit ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
  
 
  0.482
flpA
Fibrillarin-like pre-rRNA processing protein; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.
  
 0.472
Your Current Organism:
Halogeometricum rufum
NCBI taxonomy Id: 553469
Other names: CGMCC 1.7736, H. rufum, Halogeometricum rufum Cui et al. 2010, Halosarcina sp. RO1-4, Halosarcina sp. RO1-64, JCM 15770, strain RO1-4
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