Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR47645.1 | SFR47653.1 | SAMN04487947_1879 | SAMN04487947_1880 | Isochorismate synthase. | Oxidoreductase molybdopterin binding domain-containing protein. | 0.712 |
SFR47645.1 | SFR47662.1 | SAMN04487947_1879 | SAMN04487947_1881 | Isochorismate synthase. | Hypothetical protein. | 0.598 |
SFR47645.1 | SFR47668.1 | SAMN04487947_1879 | SAMN04487947_1882 | Isochorismate synthase. | Hypothetical protein. | 0.493 |
SFR47645.1 | menD | SAMN04487947_1879 | SAMN04487947_1878 | Isochorismate synthase. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.998 |
SFR47653.1 | SFR47645.1 | SAMN04487947_1880 | SAMN04487947_1879 | Oxidoreductase molybdopterin binding domain-containing protein. | Isochorismate synthase. | 0.712 |
SFR47653.1 | SFR47662.1 | SAMN04487947_1880 | SAMN04487947_1881 | Oxidoreductase molybdopterin binding domain-containing protein. | Hypothetical protein. | 0.677 |
SFR47653.1 | SFR47668.1 | SAMN04487947_1880 | SAMN04487947_1882 | Oxidoreductase molybdopterin binding domain-containing protein. | Hypothetical protein. | 0.462 |
SFR47653.1 | menD | SAMN04487947_1880 | SAMN04487947_1878 | Oxidoreductase molybdopterin binding domain-containing protein. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.626 |
SFR47662.1 | SFR47645.1 | SAMN04487947_1881 | SAMN04487947_1879 | Hypothetical protein. | Isochorismate synthase. | 0.598 |
SFR47662.1 | SFR47653.1 | SAMN04487947_1881 | SAMN04487947_1880 | Hypothetical protein. | Oxidoreductase molybdopterin binding domain-containing protein. | 0.677 |
SFR47662.1 | SFR47668.1 | SAMN04487947_1881 | SAMN04487947_1882 | Hypothetical protein. | Hypothetical protein. | 0.765 |
SFR47662.1 | SFR47678.1 | SAMN04487947_1881 | SAMN04487947_1883 | Hypothetical protein. | Membrane associated serine protease, rhomboid family. | 0.496 |
SFR47662.1 | menD | SAMN04487947_1881 | SAMN04487947_1878 | Hypothetical protein. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.533 |
SFR47668.1 | SFR47645.1 | SAMN04487947_1882 | SAMN04487947_1879 | Hypothetical protein. | Isochorismate synthase. | 0.493 |
SFR47668.1 | SFR47653.1 | SAMN04487947_1882 | SAMN04487947_1880 | Hypothetical protein. | Oxidoreductase molybdopterin binding domain-containing protein. | 0.462 |
SFR47668.1 | SFR47662.1 | SAMN04487947_1882 | SAMN04487947_1881 | Hypothetical protein. | Hypothetical protein. | 0.765 |
SFR47668.1 | SFR47678.1 | SAMN04487947_1882 | SAMN04487947_1883 | Hypothetical protein. | Membrane associated serine protease, rhomboid family. | 0.650 |
SFR47678.1 | SFR47662.1 | SAMN04487947_1883 | SAMN04487947_1881 | Membrane associated serine protease, rhomboid family. | Hypothetical protein. | 0.496 |
SFR47678.1 | SFR47668.1 | SAMN04487947_1883 | SAMN04487947_1882 | Membrane associated serine protease, rhomboid family. | Hypothetical protein. | 0.650 |
menD | SFR47645.1 | SAMN04487947_1878 | SAMN04487947_1879 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | Isochorismate synthase. | 0.998 |
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